This function can be used to extract the genotypes for all the MAGIC lines in a MagicGen or MagicGenPhen object. The genotypes can either be the SNP genotypes or the probability matrix of genotype ancestry for each MAGIC line.
getGenotypes(x, type = c("probability", "allele")) # S4 method for MagicGen getGenotypes(x, type = c("probability", "allele"))
| x | an object of class MagicGen |
|---|---|
| type | which type of genotype to retrieve. |
genotypes from MagicGenPhen object